PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27608
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 257aa    MW: 28521.7 Da    PI: 6.5833
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27608genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002883105123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C + F ++  L  H++ H
  Tp57577_TGAC_v2_mRNA27608  83 FSCNYCRRKFYSSQALGGHQNAH 105
                                89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-681110No hitNo description
PROSITE profilePS5015711.38583110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRPIFDLEVE ATEEYESDVA SNTSPNSSIL TNPTELNPHS DPISLDLSLN FNIHNDLVAR  60
DSAGISISST SEGSNEPIIP RVFSCNYCRR KFYSSQALGG HQNAHKRERT LAKRAMRMGL  120
FAERYTSLAS LPLNGNSFRS LGIKTHSSLH HGFSPPTIRP VQEIKSNVRF KQGCIGHPIL  180
LEDDETELFW QGSFHQVTEG GRVGSTHRTL SNHTSDFDPR ESNTRQSSNL CFTEVNVKPL  240
VDNIDLNSAP ELTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1488181e-145AC148818.15 Medicago truncatula clone mth2-39c7, complete sequence.
GenBankBT1377561e-145BT137756.1 Medicago truncatula clone JCVI-FLMt-15N18 unknown mRNA.
GenBankCR9403061e-145CR940306.3 M.truncatula DNA sequence from clone MTH2-10B11 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600679.11e-117zinc finger-like protein
TrEMBLG7J8Q31e-117G7J8Q3_MEDTR; Uncharacterized protein
STRINGGLYMA02G40960.31e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-42zinc finger protein 4